Research

Co-authored Publications

Deep learning model for personalized prediction of positive MRSA culture using time-series electronic health records
M Nigo, L Rasmy, B Mao, BS Kannadath, Z Xie, D Zhi
Nature Communications, Mar 2024

PK-RNN-V E: A Deep Learning Model Approach to Vancomycin Therapeutic Drug Monitoring Using Electronic Health Record Data
M Nigo, HTN Tran, Z Xie, H Feng, B Mao, L Rasmy, H Miao, D Zhi
Journal of Biomedical Informatics, Aug 2022

Recurrent neural network models (CovRNN) for predicting outcomes of patients with COVID-19 on admission to hospital: model development and validation using electronic health record data
L Rasmy, M Nigo, BS Kannadath, Z Xie, B Mao, K Patel, Y Zhou, W Zhang, A Ross, H Xu, D Zhi
The Lancet Digital Health, Apr 2022

Presentations

A deep-learning-based two-compartment predictive model (PKRNN-2CM) for vancomycin therapeutic drug monitoring
B Mao, Z Xie, L Rasmy, M Nigo, D Zhi
2023 IEEE 11th International Conference on Healthcare Informatics (ICHI), Houston, TX

Med-BERT v2: clinical foundation model on standardized secondary clinical data
L Rasmy, Y Chu, B Mao, K Patel, Z Li, H Yan, Z Xie, W Zheng, H Xu, D Zhi
Machine Learning For Healthcare 2022, Durham, NC

Posters

Technical Performance Evaluation of a Deep Learning-based Vancomycin Therapeutic Drug Monitoring Model
B Mao, M Nigo, HTN Tran, Z Xie, H Feng, L Rasmy, H Miao, D Zhi
AMIA 2022 Informatics Summit, Chicago, IL

A multi-aspect technical performance evaluation of deep learning based models for predicting COVID-19 patients outcomes on admission
L Rasmy, M Nigo, BS Kannadath, Z Xie, B Mao, A Ross, H Xu, D Zhi
AMIA 2022 Informatics Summit, Chicago, IL

Academic Projects

Biomedical Informatics

BMI 6313 Scientific Writing in Healthcare (Poster)
BMI 7302 Theories and Frameworks for Biomedical Informatics Research (Poster)
BMI 7303 Critical Review of Biomedical Informatics Literature Seminar (Poster)
BMI 7304 Advanced Research Design for Biomedical Informatics (Poster)

Data Science

BMI 5007 Methods in Health Data Science (Code Repository)
BMI 6318 Big Data in Biomedical Informatics (Code Repository)
BMI 6319 Data Analysis for Scientific Research in Biomedical Informatics (Code Repository)
BMI 6334 Deep Learning in Biomedical Informatics (Code Repository)

Statistics

PH 1976 Fundamentals of Data Analytics and Predictions (Code Repository)